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Completed Projects
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Publications
2008
Arnold - Novel Thermostable Cellulases for Waste to Fuel
Asthagiri - Quantitative Information Processing: Crosstalk and Modularity in Biological Signaling Networks
Bazan - Novel Sensory Mechanisms with Conjugated Polymers
Blascovich & Beall - Human Interactional Efficacy of Advanced Virtual Human Agents
Carlson & F. Doyle - Cognitive Neuroscience Embedded in Large-Scale Models of Systems Dynamics
Carlson & J. Doyle - Robust Yet Fragile Behavior in Complex Bio- and Bio-Inspired Networks
Clegg, Hawker, Johnson - Instructive Biomaterials for Stem Cell Differentiation
Daraio & Greer - Bio-Inspired Multi-Scale Energy-Dispersive Composites
Daugherty - Orally-Available Microprotein Therapeutics for Pathogen Toxin Neutralization
Dickinson & Murray - Bio-inspired Flight Control
Eckstein & Giesbrecht - Predicting Perceptual Decisions and Learning from Human Brain Activity Using Machine Leaning Algorithms
F. Doyle & Morse - Signal Integration in Control of Coral Lifecycles as a Model for Mobile Ad Hoc Networks
F. Doyle & Petzold - Multiscale Computational Modeling of Metabolic Insulin Signaling Pathways
Fredrickson - Theoretical Investigations of Polyelectrolyte Complexes for Biosensors
Gazzaniga & Miller - Human Variation and Cognitive Strategy
Grafton & Ashby - Dynamic Classification and Control
Grafton & Miller - Individual Differences of Brain Structure and Function in the Brain of Combat Experienced Officers
Hespanha, Khammash & Madhow - Bio-inspired Communication and Control for Networks of Autonomous Agents
Israelachvili & Turner - Fabrication of Hierarchically Structured Devices for Adhesion, Mobile Sensors and Robotics Applications
J. Doyle & Carlson - Robust Yet Fragile Behavior in Complex Bio- and Bio-Inspired Networks
Lewis - Bioinspired Chem/Bio Sensors and Sensor Arrays
Manalis - Microdevices for Pathogen Detection
Matsudaira & Lauffenburger - Spun Contractile Biopolymer Fibers
Meinhart, MacDonald & Moskovits - Microfluidic System Architecture for Rapid & High Sensitivity Detection of Chemical Agents
Moehlis & Bullo - Collective Decision Making
Morse - Bio-Inspired Materials for Lightweight Portable Energy and Sensors
Moskovits & Stucky - Bio-Inspired Nanostructured Materials for Optimal Solar Energy Conversion
Moskovits, Reich & Bazan - Ultra-sensitive Detection of Biological and Explosive Hazards
Murray & J. Doyle - Theory and Software for Analysis and Control of Bio- and Bio-inspired Networks
Pennathur - Nanofluidic Technology for Rapid Biomolecule Manipulation and Detection
Petzold & F. Doyle - Sensitivity Analysis and Discrete Stochastic Simulation of Biochemical Networks
Plaxco, Heeger & Soh - Reagentless, Electronic Molecular Sensors for the Battlefield
Soh - Rapid Invitro Directed Evolution (RiDE) Technology
Squires - Ion Manipulation Using Flows and Fields for Energy Harvesting and Storage
Stucky - Bio-Inspired Energy-Dispersive Composites: New Concepts for Blast Protection
Turner - Parametrically Resonant Mass Sensor Arrays
Tirrell, D. - Non-Canonical Amino Acids in Protein Engineering
2006
Agrawal, Singh & Suri - Information Processing Architecture for a Network of Biosensors
Arnold - Computational Enzyme Design by Structure-Guided Recombination
Asthagiri - Re-Engineering in vivo Resistance to Information Processing Through the MAP Kinase Module
Awschalom & Hu - Spin Transfer in Bio-Templated Nanowires
Bawendi - Synthesis and characterization of biologically-inspired magnetic/semiconductor nano-heterostructures
Bazan - Reusable Solid-State Optically Amplified Conjugated Polymer Sensors
Belcher - Spinning and Growing Organic-Inorganic Hybrid Fibers for Textile-Inbedded Sensors
Belcher - Virus Engineering to Self-Assemble Hybrid Biological and Electronic Materials: Towards Ultra-Lightweight Personal Power
Carlson & J. Doyle - Power Laws and Network Vulnerability in Bio and Bio-inspired Networks
Carlson & J. Doyle - Complexity and Robustness in Communication Networks
Chmelka - Characterization and Control of Light-Triggered Guest Binding and Protein Folding for Sensor Applications
Cleland & Vandenberg - Nanoscale Radiofrequency Ion Channel Probes
Cohen - A Chip-Scale Fluorometer for Biochemical Sensing
Daugherty - High-Performance Multifunctional Affinity Reagents Using New Scaffolds and Non-Canonical Amino Acids
Dickinson & Murray - Characterization of Insect Flight Control Systems
Doyle, John - Systems Biology Modeling and Simulation Languages and Software
Fredrickson & Shea - Theoretical Investigations of Polyelectrolyte Complexes for Biosensors
Han - Molecular Detection of Biochemical Processes by Highly Enhanced Nuclear Magnetic Resonance
Heath - Single Cell Diagnostics for Health Status Monitoring
Heeger, Plaxco & Petroff - Electrochemical DNA Sequence Detection: Improvement of Sensitivity
Hespanha & Madhow - De-centralized Computation and Control in Large-Scale Networks
Israelachvili & Turner - Processing, Characterization And Optimization Of Nano-Films For Adhesion And Sensor Applications
Khammash & Hespanha - Stochastic Modeling, Analysis, and Simulation of Sensor and Biochemical Networks
Kosik - Synaptic Nanomachines for Information Transfer Systems
Lauffenburger & Sorger - Biological Cue-Signal-Response Information Processing Governing Human Tissue Cell Death-vs-Survival Responses to Pathogens and Inflammation
Leadbetter, Murray & J. Doyle - Quorum Sensing and Signal Decay: Cell-Cell Communications
Lewis - Nanoparticle-based Chemiresistive Vapor Sensor Arrays
Mabuchi - New Frontiers in Single-Molecule Spectroscopy
Madhow & Belding-Royer - New Architectures for Scale and QoS in Multihop Wireless Networks
Manalis - Microdevices for real-time biomolecular detection
Marsden - Multi-scale Dynamics of Biomolecules
Matsudaira & Mello - Spun Contractile Biopolymer Fibers
Mayo - Development of Reagentless, Protein-Based Biosensor Platform for Large and/or Hydrophobic Ligands
Meinhart & Turner - AC Electrokinetic Enhancement of Bio-Sensor Performance
Morse - Biomimetic Synthesis of Advanced Materials for Improved Power: Weight Efficiency of Electrical Batteries and Photovoltaics
Moskovits, Plaxco & Reich - Biosensing using surface enhanced Raman spectroscopy: constructing nanostructures for enhancing optical detectivity of bioagents to the single molecule level
Murray, J. Doyle & Parrilo - Networked Control Systems
Petzold & F. Doyle - Sensitivity Analysis and Discrete Stochastic Simulation of Biochemical Networks
Petzold & Cotter - Towards The Development of Multiscale Simulation of a Bacterial Phosphorelay Sensory Transduction System
Reich - Nanoparticle Energy Transfer (NPET) Based Bio and Chemical Detection
Soh - High Purity Microbial Cell Sorting on Chip
Stucky & Moskovits - Molecular Assembly of Multifunctional Systems and Arrays
Tirrell, M. - Controlled Self-Assembly of Synthetic, Biologicaly Active Amphiphilic Molecules at Surface and Interfaces to Produce Multifunctional Specific Cell and Molecular Recognition
Tirrell, David - Non-Canonical Amino Acids in Protein Engineering
Turner - Development of a Mass Sensor Based on Parametric Excitation
Wittrup & Belcher - Development of Eukaryotic Cells for Adherence, Growth and Self-Healing Materials: From Optical Coatings to Wound Healing
2004
Bouwmeester & Fygenson - Signal Propagation in DNA Nanotubes
Belcher, Hu & Bawendi - Virus Engineering to Self-Assemble Hybrid Biological and Electronic
Chmelka & Plaxco - Characterization of Protein Folding on Inorganic Substrates for Biosensors by Optically Enhanced NMR
Chmelka - Interactions between Self-Assembled Biomolecules and Inorganic Surfaces
Coldren - Biophotonic Integrated Circuits
Daugherty, D. Tirrell & Mitragotri - Display Methodologies for Peptide Isolation and Engineering Using Non-Natural Amino Acids
Denbaars, Mishra, Morse & Nakamura - InGaN-Based Optoelectronic DNA Sensor
Denbaars - Tunable Blue Laser Diodes for Bioagent Detection
Fredrickson & Shea - Atomistic and Mesoscopic Simulations of Polyelectrolytes
Hansma - Macroscopic Imaging and Characterization of Self-Healing and Failure in Molecular Materials in the Regime of Impacts that Soldiers and their Equipment Must Be Able to Survive
Hu - Electrical characterization of phage-templated wire
Khammash - Modeling Of The Pap Pili Phase Variation System
Mabuchi - Single-Pair Fluorescence Resonance Energy Transfer
Matsudaira & Lauffenburger - Capturing and Processing Cellular and Molecular Signatures
Mayo - Computational Tools for Protein Design
Mezic, Meinhart, Turner & Mabuchi - Modeling Of Microfluidics Processes for Improved Sensitivity and Accuracy of Bio/Chemical Sensing Devices
Mitragotri - Long Circulating Nanoparticles As Biomolecule Hosting Platforms For Applications In Sensors And Delivery
Morse - Biotechnological and Biologically Inspired Route to Adaptive Optical. Electronic and Magnetic Materials
Petzold & Khammash - Towards the Multiscale Simulation of Biochemical Networks
Plaxco & Petroff - Nanoelectrode structures to significantly enhance the signaling characteristics of DNA- and protein-based electronic biosensors
Reich & Cleland - Nucleoprotein/quantum dot based single electron devices
Soh & Waite - Biological transducers: Piezoelectricity in non-cellular biological materials
Stucky & Deming - Nanoparticle-Polypeptide Composite Materials for Bioinspired Sensing Applications
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