ICB Supported Publications

Displaying 21 - 40 of 1222

Photolabile oligonucleotides combined with topologically imposed light gradients enable spatially resolved single-cell transcriptomics and epigenomics

Robert A. Piscopio, Alex Chialastri, Chieh Wang, Mikolaj Godzik, Kellie A. Heom, Weiyue Wang, Maxwell Z. Wilson, Siddharth S. Dey
bioRxiv (In press at Nature Biotechnology) ,
10.1101/2025.10.01.679703

Steering Generative Models with Experimental Data for Protein Fitness Optimization

J. Yang, D. Khalil, B. J. Wittmann, W. Chu, R. Astudillo, F. H. Arnold, Y. Yue
arXiv 39th Conference on Neural Information Processing System (NeurIPS 2025),
10.48550/arXiv.2505.15093

FRET dilution assay for analyzing dynamic exchange between protein assemblies and dilute phase

R. Gordon and D. E. Morse
JoVE Journal of Visualized Experiments ,
10.3791/68678

Group gains or shared pains: How social pressure influences criterion shifting

Durdle CAS, Layher E, Chuey J, Mackin M, & Miller MB
Memory,
10.1080/09658211.2025.2548569

Optogenetics-enabled discovery of integrated stress response modulators

Felix Wong, Alicia Li, Satotaka Omori, Hahn Kim, James J. Collins,
Maxwell Z. Wilson
Cell,
10.1016/j.cell.2025.06.024

A large-scale screening campaign of putative carbohydrate-active enzymes reveals a novel xylanase from anaerobic gut fungi

S. Jin, I. R. Farrand, Y. Chen, J. W. Gin, B. Zhang, E. Kirschke, C. J. Petzold, P. D. Adams, M. A. O’Malley
mBio,
10.1128/mbio.01007-25

Enzymatic Stereodivergent Synthesis of Azaspiro[2.y]alkanes

Jennifer L. Kennemur, Yueming Long, Catherine J. Ko, Anuvab Das, Frances H. Arnold
Journal of the American Chemical Society,
10.1021/jacs.5c07015

Probiotic acoustic biosensors for noninvasive imaging of gut inflammation

Buss MT, Zhu L, Kwon JH, Tabor JJ, Shapiro MG
Nature Communications,
10.1038/s41467-025-62569-1

Radical-Free Digital Light Processing 3D Printing of Hydrogels Using a Photo-Caged Cyclopentadiene Diels–Alder Strategy

Takashi Kaneko, Ronnie V. Garcia, Allison L. Chau, Angela A. Pitenis, Sijia Huang, Bryan D. Moran, Sophia J. Bailey, Craig J. Hawker and Javier Read de Alaniz
Advanced Functional Materials,
10.1002/adfm.202514415

Evaluating Multi-Modal Models for Enzyme-Reaction Retrieval

A. Viswesh, J. Yang, F. H. Arnold, Y. Yue
OpenReview ICML 2025 Workshop on Multi-modal Foundation Models and Large Language Models for Life Sciences,

Axl inhibitor-mediated reprogramming of the myeloid compartment of the in vitro tumor microenvironment is influenced by prior targeted therapy treatment

Datta A, Bahlmann LC, Gong DN, Tevonian EN, Lorens JB, Lauffenburger DA
Frontiers in Immunology ,
10.3389/fimmu.2025.1601420

Genomic and transcriptomic characterization of carbohydrate-active enzymes in novel isolate, Neocallimastix cameroonii var. constans

E. M. Blair, T. A. Navaratna, C. B. Ahern, R. Ragunathan, J. L. Brown, S. J. Mondo, A. Lipzen, R. A. Hanafy, J. Gonzalez, X. Peng, I. V. Grigoriev, M. A. O’Malley
G3 - Genes|Genomes|Genetics,
10.1093/g3journal/jkaf137

Predicting Reaction Time to Comprehend Scenes with Foveated Scene Understanding Maps

Ziqi Wen, Jonathan Skaza, Shravan Murlidaran, William Y. Wang, Miguel P. Eckstein
arXiv,
10.48550/arXiv.2505.12660

Task‑irrelevant abrupt onsets differentially impact value‑related orienting and maintenance

Carly Chak, Emily Machniak and Barry Giesbrecht
Attention, Perception & Psychophysics,
10.3758/s13414-025-03078-7

A Portable Arsenic Sensor Integrating Bacillus megaterium with CMOS Technology

Chelsea Y. Hu, John McManus, Fatemeh Aghlmand, Tracy Mei, Elin Larsson, Azita Emami, and Richard M. Murray
ACS Synthetic Biology,
10.1021/acssynbio.4c00895

Visual threat avoidance while host seeking by Aedes aegypti mosquitoes

Meyerhof, G.T., Dhavan, P., Blunk, S., Bourd, A., Singh, R., Chandel, C. and Montell, C.
Cell Reports,
10.1016/j.celrep.2025.115435

Charge screening and hydrophobicity drive progressive assembly and liquid-liquid phase separation of reflectin protein

R. Gordon, R. Levenson, B. Malady, Y. Al Sabeh, A. Nguyen, and D.E. Morse
Journal of Biological Chemistry,
10.1016/j.jbc.2025.108277

Perceptual decoupling in the sustained attention to response task is likely: comment on Bedi, Russell, & Helton (2024)

Shivang Shelat and Barry Giesbrecht
Experimental Brain Research,
10.1007/s00221-025-07032-9

Physically activated modes of attentional control 

Barry Giesbrecht, Tom Bullock and Jordan Garrett
Trends in Cognitive Sciences,
10.1016/j.tics.2024.11.006

Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning

Meimetis N, Lauffenburger DA, Nilsson A
STAR Protocols ,
10.1016/j.xpro.2024.103573
Emblems